Engineered microbes to make hydrocarbon chains that can be deoxygenated more easily and using less energy
Researchers from UC Berkeley and the NSF Center for Sustainable Polymers have developed a chemical technology that combines fermentation and chemical refining (center panels) to produce petroleum-like liquids (right) from renewable plants (left). (Image by John Beumer, courtesy of NSF Center for Sustainable Polymers)
If the petrochemical industry is ever to wean itself off oil and gas, it has to find sustainably sourced chemicals that slip effortlessly into existing processes for making products such as fuels, lubricants and plastics.
Making those chemicals biologically is the obvious option, but microbial products are different from fossil fuel hydrocarbons in two keyways: They contain too much oxygen, and they have too many other atoms hanging off the carbons. In order for microbial hydrocarbons to work in existing synthetic processes, they often have to be de-oxygenated — in chemical parlance, reduced — and stripped of extraneous chemical groups, all of which takes energy.
A team of chemists from the University of California, Berkeley, and the University of Minnesota has now engineered microbes to make hydrocarbon chains that can be deoxygenated more easily and using less energy — basically just the sugar glucose that the bacteria eat, plus a little heat.
The process allows microbial production of a broad range of chemicals currently made from oil and gas — in particular, products like lubricants made from medium-chain hydrocarbons, which contain between eight and 10 carbon atoms in the chain.
“Part of the issue with trying to move to something like glucose as a feedstock for making molecules or to drive the chemical industry is that the fossil fuel structures of petrochemicals are so different — they’re usually fully reduced, with no oxygen substitutions,” said Michelle Chang, UC Berkeley professor of chemistry and of chemical and biomolecular engineering. “Bacteria know how to make all these complex molecules that have all these functional groups sticking out from them, like all natural products, but making petrochemicals that we’re used to using as precursors for the chemical industry is a bit of a challenge for them.”
“This process is one step towards deoxygenating these microbial products, and it allows us to start making things that can replace petrochemicals, using just glucose from plant biomass, which is more sustainable and renewable,” she said. “That way we can get away from petrochemicals and other fossil fuels.”
The bacteria were engineered to make hydrocarbon chains of medium length, which has not been achieved before, though others have developed microbial processes for making shorter and longer chains, up to about 20 carbons. But the process can be readily adapted to make chains of other lengths, Chang said, including short-chain hydrocarbons used as precursors to the most popular plastics, such as polyethylene.
She and her colleagues published their results in the journal Nature Chemistry.
A bioprocess to make olefins
Fossil hydrocarbons are simple linear chains of carbon atoms with a hydrogen atom attached to each carbon. But the chemical processes optimized for turning these into high-value products don’t easily allow substitution by microbially produced precursors that are oxygenated and have carbon atoms decorated with lots of other atoms and small molecules.
To get bacteria to produce something that can replace these fossil fuel precursors, Chang and her team, including co-first authors Zhen Wang and Heng Song, former UC Berkeley postdoctoral fellows, searched databases for enzymes from other bacteria that can synthesize medium-chain hydrocarbons. They also sought an enzyme that could add a special chemical group, carboxylic acid, at one end of the hydrocarbon, turning it into what’s called a fatty acid.
All told, the researchers inserted five separate genes into E. coli bacteria, forcing the bacteria to ferment glucose and produce the desired medium-chain fatty acid. The added enzymatic reactions were independent of, or orthogonal to, the bacteria’s own enzyme pathways, which worked better than trying to tweak the bacteria’s complex metabolic network.
“We identified new enzymes that could actually make these mid-size hydrocarbon chains and that were orthogonal, so separate from fatty acid biosynthesis by the bacteria. That allows us to run it separately, and it uses less energy than it would if you use the native synthase pathway,” Chang said. “The cells consume enough glucose to survive, but then alongside that, you have your pathway chewing through all the sugar to get higher conversions and a high yield.”
That final step to create a medium-chain fatty acid primed the product for easy conversion by catalytic reaction to olefins, which are precursors to polymers and lubricants.
The UC Berkeley group collaborated with the Minnesota group led by Paul Dauenhauer, which showed that a simple, acid-based catalytic reaction called a Lewis acid catalysis (after famed UC Berkeley chemist Gilbert Newton Lewis) easily removed the carboxylic acid from the final microbial products — 3-hydroxyoctanoic and 3-hydroxydecanoic acids — to produce the olefins heptene and nonene, respectively. Lewis acid catalysis uses much less energy than the redox reactions typically needed to remove oxygen from natural products to produce pure hydrocarbons.
“The biorenewable molecules that Professor Chang’s group made were perfect raw materials for catalytic refining,” said Dauenhauer, who refers to these precursor molecules as bio-petroleum. “These molecules contained just enough oxygen that we could readily convert them to larger, more useful molecules using metal nanoparticle catalysts. This allowed us to tune the distribution of molecular products as needed, just like conventional petroleum products, except this time we were using renewable resources.”
Heptene, with seven carbons, and nonene, with nine, can be employed directly as lubricants, cracked to smaller hydrocarbons and used as precursors to plastic polymers, such as polyethylene or polypropylene, or linked to form even longer hydrocarbons, like those in waxes and diesel fuel.
“This is a general process for making target compounds, no matter what chain length they are,” Chang said. “And you don’t have to engineer an enzyme system every time you want to change a functional group or the chain length or how branched it is.”
Despite their feat of metabolic engineering, Chang noted that the long-term and more sustainable goal would be to completely redesign processes for synthesizing industrial hydrocarbons, including plastics, so that they are optimized to use the types of chemicals that microbes normally produce, rather than altering microbial products to fit into existing synthetic processes.
“There’s a lot of interest in the question, ‘What if we look at entirely new polymer structures?’,” she said. “Can we make monomers from glucose by fermentation for plastics with similar properties to the plastics that we use today, but not the same structures as polyethylene or polypropylene, which are not easy to recycle.”
University of California, Berkeley